DeepD3
latest
User Guide
DeepD3 inference
Training your own DeepD3 model
API
DeepD3 core
DeepD3 inference
DeepD3 model
DeepD3 training
DeepD3
Index
Edit on GitHub
Index
_
|
A
|
C
|
D
|
E
|
F
|
G
|
I
|
K
|
L
|
M
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
X
|
Z
_
_binarize_swc_w_spheres() (deepd3.core.dendrite.DendriteSWC method)
_changeOverlay() (deepd3.inference.gui.Interface method)
_computeDistance() (in module deepd3.core.distance)
_countOccurences() (in module deepd3.core.distance)
_distance_to_seed() (in module deepd3.core.analysis)
_distanceMatrix() (in module deepd3.core.distance)
_get_augmenter() (deepd3.training.stream.DataGeneratorStream method)
_get_sorted_seeds() (in module deepd3.core.analysis)
_getSample() (deepd3.training.stream.DataGeneratorStream method)
_neighbours() (in module deepd3.core.analysis)
A
addData() (deepd3.training.generator.Arrange method)
addStackWidget (class in deepd3.training.generator)
Arrange (class in deepd3.training.generator)
arrangeTrainingData() (deepd3.training.generator.Selector method)
askDimensions (class in deepd3.inference.gui)
askSpacing (class in deepd3.training.generator)
C
centroid3D() (in module deepd3.core.analysis)
centroids3D_from_labels() (in module deepd3.core.analysis)
changeOverlay() (deepd3.inference.gui.Interface method)
(deepd3.training.generator.addStackWidget method)
clean() (deepd3.core.analysis.ROI2D_Creator method)
cleanDendrite() (deepd3.core.analysis.Stack method)
cleanDendrite3D() (deepd3.core.analysis.Stack method)
Cleaning (class in deepd3.inference.gui)
cleaning() (deepd3.inference.gui.Main method)
cleanLabels() (in module deepd3.core.analysis)
cleanSpines() (deepd3.core.analysis.Stack method)
close() (deepd3.inference.gui.Cleaning method)
(deepd3.inference.gui.ROI2D method)
(deepd3.inference.gui.ROI3D method)
(deepd3.inference.gui.Segment method)
closing() (deepd3.core.analysis.Stack method)
connected_components_3d() (in module deepd3.core.analysis)
convert() (deepd3.core.dendrite.DendriteSWC method)
(deepd3.core.spines.Spines method)
convlayer() (in module deepd3.model.builder)
create() (deepd3.core.analysis.ROI2D_Creator method)
(deepd3.core.analysis.ROI3D_Creator method)
createSet() (deepd3.training.generator.Arrange method)
createTrainingData() (deepd3.training.generator.Selector method)
D
DataGeneratorStream (class in deepd3.training.stream)
decoder() (in module deepd3.model.builder)
deepd3.core.analysis
module
deepd3.core.dendrite
module
deepd3.core.distance
module
deepd3.core.export
module
deepd3.core.spines
module
deepd3.inference.gui
module
deepd3.model.builder
module
deepd3.training.generator
module
deepd3.training.stream
module
DeepD3_Model() (in module deepd3.model.builder)
DendriteSWC (class in deepd3.core.dendrite)
dimensions() (deepd3.inference.gui.askDimensions method)
distanceMatrix() (in module deepd3.core.distance)
do() (deepd3.inference.gui.testROI method)
DoubleSlider (class in deepd3.inference.gui)
E
export() (deepd3.core.export.ExportCentroids method)
(deepd3.core.export.ExportFolder method)
(deepd3.core.export.ExportImageJ method)
(deepd3.core.export.ExportPredictions method)
(deepd3.core.export.ExportROIMap method)
ExportCentroids (class in deepd3.core.export)
ExportFolder (class in deepd3.core.export)
ExportImageJ (class in deepd3.core.export)
exportImageJ() (deepd3.inference.gui.Main method)
ExportPredictions (class in deepd3.core.export)
exportPredictions() (deepd3.inference.gui.Main method)
exportRoiCentroids() (deepd3.inference.gui.Main method)
ExportROIMap (class in deepd3.core.export)
exportRoiMap() (deepd3.inference.gui.Main method)
exportToFolderStructure() (deepd3.inference.gui.Main method)
F
findModel() (deepd3.inference.gui.Segment method)
G
getROIsizes() (in module deepd3.core.analysis)
getSample() (deepd3.training.stream.DataGeneratorStream method)
getSelection() (deepd3.inference.gui.Interface method)
I
identity() (in module deepd3.model.builder)
ImageView (class in deepd3.inference.gui)
(class in deepd3.training.generator)
importAnnotations() (deepd3.inference.gui.Main method)
Interface (class in deepd3.inference.gui)
K
keyPressEvent() (deepd3.inference.gui.Interface method)
(deepd3.training.generator.addStackWidget method)
(deepd3.training.generator.Arrange method)
(deepd3.training.generator.ImageView method)
L
line_w_sphere() (in module deepd3.core.dendrite)
log (deepd3.core.analysis.ROI3D_Creator attribute)
M
Main (class in deepd3.inference.gui)
main() (in module deepd3.training.generator)
minMaxProbability() (in module deepd3.core.analysis)
module
deepd3.core.analysis
deepd3.core.dendrite
deepd3.core.distance
deepd3.core.export
deepd3.core.spines
deepd3.inference.gui
deepd3.model.builder
deepd3.training.generator
deepd3.training.stream
mouseDoubleClickEvent() (deepd3.inference.gui.ImageView method)
mousePressEvent() (deepd3.inference.gui.ImageView method)
O
open() (deepd3.core.dendrite.DendriteSWC method)
(deepd3.core.spines.Spines method)
(deepd3.inference.gui.Main method)
P
plane() (deepd3.training.generator.Viewer method)
populateTable() (deepd3.inference.gui.Interface method)
predictFourFold() (deepd3.core.analysis.Stack method)
predictInset() (deepd3.core.analysis.Stack method)
predictWholeImage() (deepd3.core.analysis.Stack method)
previewCleaning() (deepd3.inference.gui.Main method)
Q
QHLine (class in deepd3.inference.gui)
R
reid() (in module deepd3.core.analysis)
removeSelection() (deepd3.training.generator.Arrange method)
ROI2D (class in deepd3.inference.gui)
roi2d() (deepd3.inference.gui.Main method)
ROI2D_Creator (class in deepd3.core.analysis)
ROI3D (class in deepd3.inference.gui)
roi3d() (deepd3.inference.gui.Main method)
ROI3D_Creator (class in deepd3.core.analysis)
roiSelection() (deepd3.inference.gui.Interface method)
S
save() (deepd3.inference.gui.Main method)
(deepd3.training.generator.addStackWidget method)
(deepd3.training.generator.Viewer method)
saveSettingsROI3D() (deepd3.inference.gui.Interface method)
Segment (class in deepd3.inference.gui)
segment() (deepd3.inference.gui.Main method)
selectDendrite() (deepd3.training.generator.addStackWidget method)
Selector (class in deepd3.training.generator)
selectSpines() (deepd3.training.generator.addStackWidget method)
selectStack() (deepd3.training.generator.addStackWidget method)
setDimensions() (deepd3.inference.gui.Main method)
setMaximum() (deepd3.inference.gui.DoubleSlider method)
setMinimum() (deepd3.inference.gui.DoubleSlider method)
setShowLabels() (deepd3.inference.gui.Main method)
setShowMaxProjection() (deepd3.inference.gui.Main method)
setShowROIs() (deepd3.inference.gui.Main method)
setShowSegmentation() (deepd3.inference.gui.Main method)
setSingleStep() (deepd3.inference.gui.DoubleSlider method)
setValue() (deepd3.inference.gui.DoubleSlider method)
singleStep() (deepd3.inference.gui.DoubleSlider method)
spacing() (deepd3.training.generator.askSpacing method)
sphere() (in module deepd3.core.dendrite)
Spines (class in deepd3.core.spines)
Stack (class in deepd3.core.analysis)
T
testROI (class in deepd3.inference.gui)
testROIbuilding() (deepd3.inference.gui.Interface method)
tileSignal (deepd3.core.analysis.Stack attribute)
U
updateProgress() (deepd3.inference.gui.Interface method)
(deepd3.training.generator.addStackWidget method)
updateROI() (deepd3.training.generator.addStackWidget method)
updateZ() (deepd3.training.generator.addStackWidget method)
V
value() (deepd3.inference.gui.DoubleSlider method)
Viewer (class in deepd3.training.generator)
viewTrainingData() (deepd3.training.generator.Selector method)
X
xyzr() (in module deepd3.core.dendrite)
Z
zprojection() (deepd3.inference.gui.Main method)
zSignal (deepd3.core.analysis.ROI2D_Creator attribute)
(deepd3.core.analysis.ROI3D_Creator attribute)
Read the Docs
v: latest
Versions
latest
Downloads
pdf
html
epub
On Read the Docs
Project Home
Builds