Welcome to DeepD3’s documentation!

With DeepD3, you are able to predict the presence and absence of dendritic spines and dendrites in 3D microscopy stacks. We evaluated DeepD3 on a variety of species, resolutions, dyes and microscopy types. In this documentation, you find information how to train your own DeepD3 model, how to use DeepD3 in inference mode and how to use the API to create custom scripts.

User Guide

• DeepD3 inference
• Training your own DeepD3 model
  • Create training data
  • View training data
  • Arrange training data
  • Actual training

API

• DeepD3 core
  • analysis
  • dendrite
  • spines
  • export
  • distance
• DeepD3 inference
  • gui
• DeepD3 model
  • builder
• DeepD3 training
  • generator
  • stream

Indices and tables

• Index

• Module Index

• Search Page